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1

A compendium of RNA-binding motifs for decoding gene regulation

Ray, Debashish, Kazan, Hilal, Cook, Kate B., Weirauch, Matthew T., Najafabadi, Hamed S., Li, Xiao, Gueroussov, Serge, Albu, Mihai, Zheng, Hong, Yang, Ally, Na, Hong, Irimia, Manuel, Matzat, Leah H., D

Journal:

Year:

2013

Language:

english

File:

PDF, 1.60 MB

english, 2013

2

Fitbits, field-tests, and grades: The effects of a healthy and physically active lifestyle on the academic performance of first year college students

Broaddus, Allie M., Jaquis, Brandon J., Jones, Colt B., Jost, Scarlet R., Lang, Andrew S.I.D., Li, Ailin, Li, Qiwen, Nelson, Philip P., Spear, Esther M.

Journal:

International Journal of Sport and Exercise Psychology

Year:

2019

Language:

english

File:

PDF, 1.01 MB

english, 2019

3

10.1038/43487

Marmorstein, Ronen, Rojas, Jeannie R., Trievel, Raymond C., Zhou, Jianxin, Mo, Yi, Li, Xinmin, Berger, Shelley L., Allis, C. David

Journal:

Year:

1999

Language:

english

File:

PDF, 443 KB

english, 1999

4

How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers

Taverna, Sean D, Li, Haitao, Ruthenburg, Alexander J, Allis, C David, Patel, Dinshaw J

Journal:

Nature Structural and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 2.23 MB

english, 2007

5

Ex vivo expanded human CD4+CD25+Foxp3+ regulatory T cells prevent lethal xenogenic graft versus host disease (GVHD)

Tinghua Cao, Allis Soto, Wei Zhou, Weihong Wang, Steven Eck, Mindi Walker, Gregory Harriman, Li Li

Journal:

Cellular Immunology

Year:

2009

Language:

english

File:

PDF, 408 KB

english, 2009

6

A review on mechanical properties of pressure sensitive adhesives

Sun, Shaomin, Li, Mengling, Liu, Ally

Journal:

International Journal of Adhesion and Adhesives

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

7

Analytical tools and current challenges in the modern era of neuroepigenomics

Maze, Ian, Shen, Li, Zhang, Bin, Garcia, Benjamin A, Shao, Ningyi, Mitchell, Amanda, Sun, HaoSheng, Akbarian, Schahram, Allis, C David, Nestler, Eric J

Journal:

Nature Neuroscience

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

8

Involvement of Histone Methylation and Phosphorylation in Regulation of Transcription by Thyroid Hormone Receptor

Li, J., Lin, Q., Yoon, H.-G., Huang, Z.-Q., Strahl, B. D., Allis, C. D., Wong, J.

Journal:

Molecular and Cellular Biology

Year:

2002

Language:

english

File:

PDF, 261 KB

english, 2002

9

Reading between the Lines: “ADD”-ing Histone and DNA Methylation Marks toward a New Epigenetic “Sum”

Noh, K. M., Allis, C. D., Li, H.

Journal:

ACS Chemical Biology

Year:

2018

File:

PDF, 153 KB

2018

10

A Novel Method for Evaluating the Cardiotoxicity of Traditional Chinese Medicine Compatibility by Using Support Vector Machine Model Combined with Metabonomics

Li, Yubo, Zhou, Haonan, Xie, Jiabin, Ally, Mayassa Salum, Hou, Zhiguo, Xu, Yanyan, Zhang, Yanjun

Journal:

Evidence-based Complementary and Alternative Medicine

Year:

2016

Language:

english

File:

PDF, 1.96 MB

english, 2016

11

Silver nanoparticles selectively treat triple‐negative breast cancer cells without affecting non‐malignant breast epithelial cells in vitro and in vivo

Swanner, Jessica, Fahrenholtz, Cale D., Tenvooren, Iliana, Bernish, Brian W., Sears, James J., Hooker, Allison, Furdui, Cristina M., Alli, Elizabeth, Li, Wencheng, Donati, George L., Cook, Katherine L

Journal:

FASEB BioAdvances

Year:

2019

Language:

english

File:

PDF, 2.63 MB

english, 2019

12

Small mode volume plasmonic film-coupled nanostar resonators

Charchi, Negar, Li, Ying, Huber, Margaret, Kwizera, Elyahb Allie, Huang, Xiaohua, Argyropoulos, Christos, Hoang, Thang Ba

Journal:

Nanoscale Advances

Year:

2020

File:

PDF, 1.15 MB

2020

13

A study on the effectiveness of a defined microbial consortium to enhance the microbiological safety of cattle manure

Liu, Guoxia, Mamode Ally, Nooreen, Dooly, Daminee Devi, Li, Yin, Boodhoo, Kamleshwar, Neetoo, Hudaa

Journal:

Journal of the Science of Food and Agriculture

Year:

2020

File:

PDF, 330 KB

2020

14

ChemInform Abstract: A Practical Route to Functionalized (Phenylethynyl)phenylthiol Acetates for Self-Assembled Monolayer Studies.

James P. Collman, Min Zhong, Simona Costanzo, Christopher J. Sunderland, Ally Aukauloo, Katja Berg, Li Zeng

Journal:

Year:

2001

File:

PDF, 34 KB

2001

15

Use of Acidification, Low Temperature, and Sorbates for Storage of Orange Juice

Z. LI, I. ALLI, S. KERMASHA

Journal:

Journal of Food Science

Year:

1989

Language:

english

File:

PDF, 567 KB

english, 1989

16

10.1038/43494

Marmorstein, Ronen, Rojas, Jeannie R., Trievel, Raymond C., Zhou, Jianxin, Mo, Yi, Li, Xinmin, Berger, Shelley L., Allis, C. David

Journal:

Year:

1999

Language:

english

File:

PDF, 56 KB

english, 1999

17

Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF

Li, Haitao, Ilin, Serge, Wang, Wooikoon, Duncan, Elizabeth M., Wysocka, Joanna, Allis, C. David, Patel, Dinshaw J.

Journal:

Year:

2006

Language:

english

File:

PDF, 528 KB

english, 2006

18

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

Ooi, Steen K. T., Qiu, Chen, Bernstein, Emily, Li, Keqin, Jia, Da, Yang, Zhe, Erdjument-Bromage, Hediye, Tempst, Paul, Lin, Shau-Ping, Allis, C. David

Journal:

Year:

2007

Language:

english

File:

PDF, 457 KB

english, 2007

19

Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger

Wang, Gang G., Song, Jikui, Wang, Zhanxin, Dormann, Holger L., Casadio, Fabio, Li, Haitao, Luo, Jun-Li, Patel, Dinshaw J., Allis, C. David

Journal:

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

20

Multivalent engagement of chromatin modifications by linked binding modules

Ruthenburg, Alexander J., Li, Haitao, Patel, Dinshaw J., David Allis, C.

Journal:

Nature Reviews Molecular Cell Biology

Year:

2007

Language:

english

File:

PDF, 1.02 MB

english, 2007

21

PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing

Zhao, Quan, Rank, Gerhard, Tan, Yuen T, Li, Haitao, Moritz, Robert L, Simpson, Richard J, Cerruti, Loretta, Curtis, David J, Patel, Dinshaw J, Allis, C David

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 598 KB

english, 2009

22

Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex

Ruthenburg, Alexander J, Wang, Wooikoon, Graybosch, Daina M, Li, Haitao, Allis, C David, Patel, Dinshaw J, Verdine, Gregory L

Journal:

Nature Structural and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 867 KB

english, 2006

23

Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3

Jacobs, Steven A., Taverna, Sean D., Zhang, Yinong, Briggs, Scott D., Li, Jinmei, Eissenberg, Joel C., Allis, C. David, Khorasanizadeh, Sepideh

Journal:

The EMBO Journal

Year:

2001

Language:

english

File:

PDF, 469 KB

english, 2001

24

Hormone-dependent, CARM1-directed, arginine-specific methylation of histone H3 on a steroid-regulated promoter

Han Ma, Christopher T. Baumann, Hongwei Li, Brian D. Strahl, Rene Rice, Mary Anne Jelinek, Dana W. Aswad, C.David Allis, Gordon L. Hager, Michael R. Stallcup

Journal:

Current Biology

Year:

2001

Language:

english

File:

PDF, 207 KB

english, 2001

25

Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data

Ágnes Baross, Allen D Delaney, H Irene Li, Tarun Nayar, Stephane Flibotte, Hong Qian, Susanna Y Chan, Jennifer Asano, Adrian Ally, Manqiu Cao, Patricia Birch, Mabel Brown-John, Nicole Fernandes, Anne

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 548 KB

english, 2007

26

Glucose-6-phosphate mediates activation of the carbohydrate responsive binding protein (ChREBP)

Ming V. Li, Weiqin Chen, Romain N. Harmancey, Alli M. Nuotio-Antar, Minako Imamura, Pradip Saha, Heinrich Taegtmeyer, Lawrence Chan

Journal:

Biochemical and Biophysical Research Communications

Year:

2010

Language:

english

File:

PDF, 291 KB

english, 2010

27

Pro Isomerization in MLL1 PHD3-Bromo Cassette Connects H3K4me Readout to CyP33 and HDAC-Mediated Repression

Zhanxin Wang, Jikui Song, Thomas A. Milne, Gang G. Wang, Haitao Li, C. David Allis, Dinshaw J. Patel

Journal:

Year:

2010

Language:

english

File:

PDF, 1.74 MB

english, 2010

28

Recognition of a Mononucleosomal Histone Modification Pattern by BPTF via Multivalent Interactions

Alexander J. Ruthenburg, Haitao Li, Thomas A. Milne, Scott Dewell, Robert K. McGinty, Melanie Yuen, Beatrix Ueberheide, Yali Dou, Tom W. Muir, Dinshaw J. Patel, C. David Allis

Journal:

Year:

2011

Language:

english

File:

PDF, 1.95 MB

english, 2011

29

Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger

Haitao Li, Wolfgang Fischle, Wooikoon Wang, Elizabeth M. Duncan, Lena Liang, Satoko Murakami-Ishibe, C. David Allis, Dinshaw J. Patel

Journal:

Year:

2007

Language:

english

File:

PDF, 2.19 MB

english, 2007

30

Selective changes in thalamic and cortical GABAA receptor subunits in a model of acquired absence epilepsy in the rat

Huifang Li, Alli Kraus, Jie Wu, John R. Huguenard, Robert S. Fisher

Journal:

Neuropharmacology

Year:

2006

Language:

english

File:

PDF, 401 KB

english, 2006

31

PGC-1α and ERRα target gene downregulation is a signature of the failing human heart

Smita Sihag, Sharon Cresci, Allie Y. Li, Carmen C. Sucharov, John J. Lehman

Journal:

Journal of Molecular and Cellular Cardiology

Year:

2009

Language:

english

File:

PDF, 1.07 MB

english, 2009

32

Alpha-1-antitrypsin deficiency and smoking as risk factors for mismatch repair deficient colorectal cancer: A study from the colon cancer family registry

Noralane M. Lindor, Ping Yang, Ilonka Evans, Karen Schowalter, Mariza De Andrade, Jia Li, Elysia Jeavons, Gloria Peterson, Steve Gallinger, Bharati Bapat, John Hopper, Jeremy Jass, Mark Jenkins, Allys

Journal:

Molecular Genetics and Metabolism

Year:

2010

Language:

english

File:

PDF, 135 KB

english, 2010

33

A Novel Histone Acetyltransferase Is an Integral Subunit of Elongating RNA Polymerase II Holoenzyme

Birgitte Ø Wittschieben, Gabriel Otero, Therese de Bizemont, Jane Fellows, Hediye Erdjument-Bromage, Reiko Ohba, Yang Li, C.David Allis, Paul Tempst, Jesper Q Svejstrup

Journal:

Year:

1999

Language:

english

File:

PDF, 381 KB

english, 1999

34

Adrenergic-Pathway Gene Variants Influence Beta-Blocker–Related Outcomes After Acute Coronary Syndrome in a Race-Specific Manner

Sharon Cresci, Gerald W. Dorn II, Philip G. Jones, Amber L. Beitelshees, Allie Y. Li, Petra A. Lenzini, Michael A. Province, John A. Spertus, David E. Lanfear

Journal:

Journal of the American College of Cardiology

Year:

2012

Language:

english

File:

PDF, 1.02 MB

english, 2012

35

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing

Ramos, Enrique, Levinson, Benjamin T, Chasnoff, Sara, Hughes, Andrew, Young, Andrew L, Thornton, Katherine, Li, Allie, Vallania, Francesco LM, Province, Michael, Druley, Todd E

Journal:

Year:

2012

Language:

english

File:

PDF, 554 KB

english, 2012

36

Extraction and Precipitation of Proteins From Brewer's Spent Grain

Ervin, V., Alli, I., Smith, J.P., Li, Z.

Journal:

Canadian Institute of Food Science and Technology Journal

Year:

1989

Language:

english

File:

PDF, 1.51 MB

english, 1989

37

ATRX ADD domain links an atypical histone methylation recognition mechanism to human mental-retardation syndrome

Iwase, Shigeki, Xiang, Bin, Ghosh, Sharmistha, Ren, Ting, Lewis, Peter W, Cochrane, Jesse C, Allis, C David, Picketts, David J, Patel, Dinshaw J, Li, Haitao, Shi, Yang

Journal:

Nature Structural and Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.60 MB

english, 2011

38

In-vitro α-amylase inhibitor activity-phytate relationships in proteins from Phaseolus beans

Li, Z., Alli, I., Kermasha, S.

Journal:

Food Research International

Year:

1993

Language:

english

File:

PDF, 770 KB

english, 1993

39

22. The Alpha-amylase Inhibitory Activity of Proteins of Phaseolus Beans

Li, Z., Alli, I., Kermasha, S.

Journal:

Canadian Institute of Food Science and Technology Journal

Year:

1989

Language:

english

File:

PDF, 282 KB

english, 1989

40

IL-10 modulates DSS-induced colitis through a macrophage–ROS–NO axis

Li, B, Alli, R, Vogel, P, Geiger, T L

Journal:

Mucosal Immunology

Year:

2013

Language:

english

File:

PDF, 923 KB

english, 2013

41

Identification of Vascular Breast Tumor Markers by Laser Capture Microdissection and Label-Free LC−MS

Hill, Jennifer J., Tremblay, Tammy-Lynn, Pen, Ally, Li, Jie, Robotham, Anna C., Lenferink, Anne E. G., Wang, Edwin, O’Connor-McCourt, Maureen, Kelly, John F.

Journal:

Journal of Proteome Research

Year:

2011

Language:

english

File:

PDF, 5.54 MB

english, 2011

42

Does adjuvant radiotherapy benefit patients with diffuse-type gastric cancer? Results from the Surveillance, Epidemiology, and End Results database

Stessin, Alexander M., Sison, Cristina, Schwartz, Allie, Ng, John, Chao, Clifford K.S., Li, Baoqing

Journal:

Year:

2014

Language:

english

File:

PDF, 127 KB

english, 2014

43

Positively Charged Sol−Gel Coatings for On-Line Preconcentration of Amino Acids in Capillary Electrophoresis

Li, Wen, Fries, David, Alli, Abdel, Malik, Abdul

Journal:

Analytical Chemistry

Year:

2004

Language:

english

File:

PDF, 181 KB

english, 2004

44

Tryptic hydrolysis (in vitro) of crystalline and noncrystalline proteins from Phaseolus beans

Li, Zhuo, Alli, Inteaz, Kermasha, Selim

Journal:

Journal of Agricultural and Food Chemistry

Year:

1989

Language:

english

File:

PDF, 3.33 MB

english, 1989

45

Functional Mapping of the Zebrafish Early Embryo Proteome and Transcriptome

Alli Shaik, Asfa, Wee, Sheena, Li, Rachel Hai Xia, Li, Zhen, Carney, Tom J., Mathavan, Sinnakaruppan, Gunaratne, Jayantha

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.39 MB

english, 2014

46

ATRX tolerates activity-dependent histone H3 methyl/phos switching to maintain repetitive element silencing in neurons

Noh, Kyung-Min, Maze, Ian, Zhao, Dan, Xiang, Bin, Wenderski, Wendy, Lewis, Peter W., Shen, Li, Li, Haitao, Allis, C. David

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.07 MB

english, 2015

47

Acute ethanol induces apoptosis by stimulating TRPC6 via elevation of superoxide in oxygenated podocytes

Lu, Xiao-Yu, Liu, Bing-Chen, Wang, Li-Hua, Yang, Li-Li, Bao, Qing, Zhai, Yu-Jia, Alli, Abdel A., Thai, Tiffany L., Eaton, Douglas C., Wang, Wei-Zhi, Ma, He-Ping

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

Year:

2015

Language:

english

File:

PDF, 3.19 MB

english, 2015

48

Smoothened Variants Explain the Majority of Drug Resistance in Basal Cell Carcinoma

Atwood, Scott X., Sarin, Kavita Y., Whitson, Ramon J., Li, Jiang R., Kim, Geurim, Rezaee, Melika, Ally, Mina S., Kim, Jinah, Yao, Catherine, Chang, Anne Lynn S., Oro, Anthony E., Tang, Jean Y.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.46 MB

english, 2015

49

Reply re

Ali, Mohammad Javed, Yuen, Hunter Kwok Lai, Lee, Allie, Li, Emmy Yuen Mei, Wong, Alex Chun Wah

Journal:

Ophthalmic Plastic & Reconstructive Surgery

Year:

2014

Language:

english

File:

PDF, 224 KB

english, 2014

50

Balloon Dacryoplasty in Internal Ostium Stenosis After Endoscopic Dacryocystorhinostomy

Lee, Allie, Ali, Mohammad Javed, Li, Emmy Yuen Mei, Wong, Alex Chun Wah, Yuen, Hunter Kwok Lai

Journal:

Ophthalmic Plastic & Reconstructive Surgery

Year:

2014

Language:

english

File:

PDF, 276 KB

english, 2014